VivoQuant change.log Copyright (c) 2005-2015 Christian Lackas, inviCRO, LCC. http://www.vivoquant.com/01-Changes.txt VivoQuant is a trademark and iPACS is a registered trademark of inviCRO, LLC. InVivoScope is a trademark and NanoSPECT, NanoSPECT/CT, NanoPET are registered trademarks of Bioscan, Inc. All other marks, trademarks and registered trademarks are properties of their respective owners. - VQ 3.5 * Workflow: Fix broken links in some tutorials * VQ: Fix embed dialog for loading of planar data atop volumetric data * eCRF: Allow post-processing VivoScript upon loading forms * VQ: Add support for multi-frame diffusion data from MR Solutions * MAS: Add Symmetric Normalization (SyN) algorithm to non-linear options * Filtering: Add mean and median image filters * VQ: Support maximizing viewports in Multi View with right click + Full View * Annotations: Submit annotations to repository of all loaded data * VQ: Show ROI name in Multi View tooltips * VQ: Use replace for drag and drop of data into Multi View * 3D ROI Tool: Add special case for statistics in 1-voxel ROIs * Brain Atlas: Improve co-registration algorithm for CT images * VivoScript: Added functions for SUV lean body mass computation * VQ: Fix moving reference to input 1 in data list * 3D ROI Tool: Add derivation description for ROI cuts * Cropping: Fix derivation description for embedding * VQ: Create false DICOM header for Nifti data * VivoScript: Improve stability when applying reorientation transforms * VQ: Add configurable audit trail together with iPACS system * US: Add support for B-Mode Ultrasound data from VisualSonics * VQ: Improve support for MR DICOM module exports from PMOD * VQ: Update unique ID for derived images after saving * Arithmetics: Improve derivation image description for multi-selection operators * Reorientation: Expand range of scaling parameters * CT Reco: Improve performance of reconstructions by reducing interface updates * VQ: Added custom Magnetic Insight color palette * eCRF: Support global queries of repository for worklist tasks * eCRF: Add priority fields to worklist * 3D ROI Tool: Improve stability when using crop range after resampling * VivoScript: Added functions for layout operator * VQ: Allow saving of custom hanging protocols * VQ: Add support for hanging protocols in Multi View * 3D ROI Tool: Improve support for DICOM RTSTRUCT import of ROIs * Arithmetics: Improve computed display window for derived average images * eCRF: Fix display of multiple DICOM tags in one element * VivoScript: Add support for submitting project level data points on iPACS * MAS: Improve co-registration algorithms * Reorientation: Allow flexible selection of moving and fixed images * VQ: Add multi-select and right click menus to layout operator * VQ: Enable Biodistribution Visualization Tool * Reorientation: Fix auto-zoom when switching between 2D and 3D tabs * Reorientation: Improve display of non-linear parameter descriptions * Modeling: Improve stability of fat modeling tool on Mac OS * VQ: Add resample-on-load operations to DerivationImageSequence * Annotations: Added circle and point annotation types * VQ: Fix minor memory leak in 2D co-registration tools * VQ: Improve error messages regarding local cache * VQ: Improve export of planar data in DICOM format * Volume Rendering: Click on orientation widget to reorient camera * Volume Rendering: Improve orientation widget with custom models * VivoScript: Add support for worklist module * Annotations: Fix label display in Radiologist mode * VQ: Read frame meta-information for GE Vista Interfile format * 3D ROI Tool: Fix indexing issue when deleting multiple ROIs * VQ: Fix reloading of meta-information from session-saved Bruker data * VQ: Added support for custom frame information in NucMed MetaImage data * Reorientation: Add slice-to-slice landmark-based 2D co-registration * Reorientation: Add flexible landmark-based 3D co-registration * VQ: Add support for mp4 movie storage * VQ: Add support for VQ sessions in Multi View * Time Series: Improve interface responsiveness * Volume Rendering: Fix display of crop box * 3D ROI Tool: Fix export of ROIs as .vtk, .obj, and .vrml * VQ: Improve performance when loading large 2D images * 3D ROI Tool: Ensure iPACS uploaded ROI files have creator in filename * VivoScript: Quite mode for clearROIs and cutROI functions * VivoScript: added non-modal option for showMessage() and askYesNoQuestion(). * VQ: New way to reshape the Multi View layout in the Layour operator. * VQ: Add option to merge/split view ports in Multi View. * VQ: Distance/Annotation, Filtering, Arithmetic and Modeling operators to Multi View mode. * VQ: Add configurable slice information in the display * VivoScript: getTempFolder function for system's temporary directory * VivoScript: new saveDataViaITK function available * VQ: Improve VTK Volume Rendering module * VQ: Allow custom imported bed templates for bed removal * VQ: New and improved Bed Removal tool * Filtering: New adaptive non-Local means denoising filter * VivoScript: add functionality for Multi-View * Filtering: Advanced options for N4 bias field correction * 3D ROI Tool: Only double click to COM for first table column - VQ 3.0patch1 * VQ: Annotations now linked by default and fix for the orientation issue. * 3D Brain Tool: Improve support for custom and additional species * VQ: Bio-Dist Visualization tool for custom ROI templates * VQ: Check for running instances of VivoQuant prior to installation * VQ: Added better support for loading HDR format dynamic data. * VQ: Fixed derivation description DICOM tags for Arithmetic operation. * Reorient: Widen scaling range for manual transforms * Arithmetics: Include information about previous units when averaging * Arithmetics: Disambiguate series description after averaging * Arithmetics: Fixed derivation image description for compound functions * VQ: Added default palette option for magnetic particle imaging modality * Modeling: Fix stability issue in fat modeling tool * VQ: Add image opening operations to derivation image description * DICOM: Improve storage of planar data * Dosimetry: Fix stability issue of AUC calculator * Distance/Annotation: Improve default location of annotations * 3D ROI Tool: Fix multi-selection ROI deletion * VQ: Additional meta-information in viewport * VQ: Overlay ROI names in multi-view when visible * VivoScript: Add VQ.copyFile and VQ.renameFile functions - VQ 3.0 * VivoScript: Added new command launch argument: --script-args [arg1,arg2,...]. * VQ: Changed default distance annotation (linked by default) and appearing in the center when unlinking * eCRF: Added Worklist tool * VQ: Added preset menu to Data Manager context menu when CT data is loaded * VQ: Added window level / width palette control. * VivoScript: Do not allow double inclusion of dependencies * VivoScript: Fixed accuracy of line numbers in error reporting * VQ: Calibration factor already applied for Inveon 2.0 MM CT data * 3D ROI: Double-click on ROI navigates to its center of mass in view * VivoScript: More flexibility with clearROI() and cutROI() of 3D ROI tool * VQ: Improve user message for license request page * Arithmetic: Improved unit and modality preservation for appended images. * 3D ROI: Fix for thresholding algorithms when using crop range. * VQ: Upgraded Qt, ITK, VTK, ImageMagick, DCMTK, and Qwt libraries * VQ: Disk Image installer for Mac OS X * VQ: Improved support of HiDPI displays in VTK viewer * VQ: Support for PMOD split timepoint data * VQ: Added datapoint FormFu viewer for iPACS data * VQ: Added eCRF forms with compatible iPACS systems * DICOM: Increased support for private tags * VTK: Upgrade to OpenGL 2 on Mac OS X * VTK: Improved stability rendering quality option * Reorient Op: Save ITK transforms from operator * 3D ROI: Support for .voi format ROIs * VivoScript: Added support for VQSCRIPT_PATH environment variable * VivoScript: plotData function in 3D ROI tool * Filtering: stability improvements to rendering * VQ: Support for ECAT 7 data format * VivoScript: plotData function in 3D ROI tool * VQ: Frame time editor for headers * Modeling: Akaike information criterion for tracer models * Modeling: Bayesian information criterion for tracer models * Modeling: Weighted least squares fitting for tracer models * Modeling: Flexible fixing of parameters for tracer models * Modeling: Parameter bounds for tracer model parameters * Modeling: Increased precision of modeling output display * Modeling: Combined ROI plots for tracer models * Modeling: Parameter histogram plots for tracer models * Modeling: Bar plots for ROIs from tracer models * Modeling: Configurable plotting options for tracer models * Modeling: MA1, MRTM, and MRTM2 tracer models * Modeling: Time-stability analysis of tracer models * Modeling: Indicate when fit is outside mask for tracer models * Modeling: Parameter-wise estimation error estimates * VivoScript: include files from VQSCRIPT_PATH environment variable * VTK: Fix rendering speed dropdown * VTK: Better handle HiDPI displays * VivoScript: Improved appearance of Quick Scripts toolbar * VQ: Fix issues with sizing of MIP viewer in layout * VQ: Improved support for GE Locus data format * VivoScript: Access to non-linear registration tools * VQ: Consistent voxel value for Multi-View * VTK: Use Ray Cast renderer by default * VQ: Use color-coded crosshair by default * VTK: Improve stability in edge cases * VQ: New electronic case report form module (eCRF) * eCRF: Flexible data point editing and creation * eCRF: Project-configurable form lists * Reorient Op: Allow saving of transforms in ITK format (.tfm) * ZIPACS: Permissive handling of errors and edge cases * Reorient Op: Fix for handling of legacy tranform format * VQ: Frame time editor to correct DICOM headers * DICOM: Support for MR Solutions data * VQ: Additional species added to default list * VivoScript: Better support for export of 3D ROI statistics * VivoScript: Functions for reading arbitrary text files * VQ: Flexible data selector for operators * VQ: Improved appearance of dynamic dropdown interfaces * 3D ROI: Cosmetic fix to default max value of empty ROIs * VQ: Advanced configurable user interface for simplification * 3D ROI: Fix for undo/redo for hidden/immutable states * Reorient Op: Log transformation parameters to image header * VQ: Improved support for dynamic Bruker data * DICOM: Support for loading data combined with report forms * 3D ROI: Additional concentration metrics for quantification * 3D ROI: Median value for region quantification * 3D ROI: Configurable columns of quantification table * Reorient Op: Move image flipping checkboxes to main interface * VQ: Improve error messages across a variety of modules * DICOM: Improved support for MR class * VivoScript: Improved interface to arithmetics operator * VQ: Improved support of variable image matrix sizes * VTK: Improved responsiveness for volumetric data * 3D ROI: Improved data axis for region plots * 3D ROI: Improved import of previously existing ROIs * VQ: Fix for tile view updates from Min/Max tool * VivoScript: Add function for changing background of VTK viewer * Arithmetic: Improved unit and modality preservation for appended images. * VivoScript: Change the current text in a QComboBox using simply the name of the widget. Gobsmacked Goshawk - VQ 2.5patch3 * 3D ROI: Improvements to table row selection * 3D ROI: Improve stability of spline tool * VivoScript: Default included folders on Mac OS X - VQ 2.5patch2 * VQ: Support for PMOD split timepoint data * PK Modeling: Fix for tracer modeling convolution * PK Modeling: Fix for MSE computation * Reorient Op: Stability fix for loading transforms * 3D ROI: Improve speed of iPACS uploads, especially with supported iPACS * VQ: Preserve units with split ROI to DICOM tool * VivoScript: fix include path for installed scripts on Mac OS X * Brain Tool: Use installed list file for customizable species - VQ 2.5patch1 * VQ: New ordering of operator dropdown menu * VQ: Fix stability issue in cropping operator * VQ: Fix color bar height for MIP viewer in non-square images * DICOM: Added option for ignoring frame of reference UID * VQ: Improved user display for tracer modeling fits outside of mask * VQ: Show current viewport's voxel value in view controller for multi view * VQ: Improved help guide for tracer kinetic modeling * VQ: Fix stability issue for CT reconstruction module * VQ: Improved support for GE Locus .dat format * VQ: Fix for slice interpolator in coronal and transverse planes * Brain Tool: Support for custom atlases * Reorient Op: Log Diffeomorphic Demons co-registration algorithm * VivoScript: Increase width of quick scripts dropdown * DICOM: Improved support of Mediso DWI data * DICOM: Added support for MRSolutions single-slice data * VivoScript: execReport and openInBrowser support for WebDisk * Brain Tool: Remove deprecated tracer modeling component * VQ: iPACS 2.0 logos! * Reorient Op: Convergence criteria to non-linear registration - VQ 2.5: * DICOM: Fix for loading of B-value tags in special cases * VQ: Fix duplicate VTK viewer created from loaded session * VQ: Fix tracer kinetic model plots when data excluded * VQ: Support for dynamic BioPET/CT data * VQ: Stability improvment for default shifts * VQ: Fix applied auto-segmentation 2D in Radiologist view * VQ: Improved support for Radiologist view * VQ: Zoom/pan controls within each individual viewport * VQ: Data-specific color palette controls * VQ: Improved data manager look and feel * VQ: Support for non-contiguous data manager selections * VQ: Improved stability of distance/annotation tool * VQ: Overhauled Multi-View supporting 5x5 layouts * PK Modeling: SRTM, SRTM2, 1TCM, and 2TCM tracer kinetic models * PK Modeling: Voxel-wise support for all models * DICOM: Assume HU for CT data without units * VQ: Helpful new startup tips and hints * VQ: Improved various help guide sectors * VQ: New Connect to iPACS action for quick setup Flying Fish - VQ 2.1: * VQ: Quick Access Scripts toolbar improvements, separate button for Eval.vqs * VQ: Fix 3D ROI Tool paintbrush cursor shape to update appropriately * VQ: Warning message when setPos for index out of range * VQ: Improve upsampling view for better quality presentation images * VQ: Improve security in iPACS communication * VQ: Support for DICOM exported data off Bruker system * VQ: 3D ROI tool: fix paintbrush edge case on last slices * VQ: 3D ROI tool: Modal smoothing ignores immutable ROIs * VQ: Improve spline tool usability * VQ: Brain tool: Fix for non-square transverse plane data * VQ: Reorient: increase precision of reorientation parameters * VQ: Support for Inveon 2.0 registered data * VQ: Improve license registration for users with existing license * VQ: Whole Body Atlas tool performance and quality improvements * VQ: Fix stability issues with MIP * VQ: Added limits to unstable ADC modeling * VQ: Improve palette performance on Linux systems * VQ: Fix potential stability issue in Capture Viewer * VQ: Fix Radiologist view for Filtering and Quant++ operators * VQ: Support for ReSPECT Interfile data format * BrainAtlas: Prevent problematic workflows with scaling quant data * VivoScript: New and improved toolbar for quick access of VivoScripts * VQ: Modeling: Clamp outlier ADC values commonly found in background * VivoScript: Fix stacking of suspend and modal dialogs Elite Emu - VQ 2.0: * VQ: Substantial performance improvements for large 2D data sets * VQ: Anonymization of loaded false DICOM headers * VQ: RGB data visualization and import * Cropping: Cropping of RGB data * VQ: Resampling of RGB data * Data: Added support for Interfile formats from Bioscan BioPET/CT * VQ: Render data when transverse plane is not a square FOV * IPACS: Improve performance of repeated communication with session cookies * DICOM: Generalize import of window min and max values. * Cropping: Do not force square FOV in transverse plane * GUI: New buttons and look for the interface * Sessions: Fix crash when session contains no image data * Arithmetics: Add exponentiate with scalar operation * Filtering: Added N3 Bias field correction * VivoScript: Added functions for drawing ROIs * Bruker: Support for many more data sets, including from ParaVision 6 * VQ: Legacy Volume Rendering tool removed * VQ: Added opacity tool for VTK Viewer * VQ: On-the-fly compression of DICOM queries for better performance * DICOM: Option to bypass DICOM Capture Viewer * VQ: Support for Gel format from STORM Autoradiography * VQ: Fix stability issue in Filtering operator * VQ: Radiological view configurable in real-time * VQ: Lower memory footprint for loading of 2D data * VQ: Add support for saving Analyze format via ITK * GUI: Reorganization and refresh of menus * VQ: Ability to pan in the MPR view * VQ: Deprecate CT reconstruction module * VQ: Ability to customize quantification tables * VQ: Custom quantification data points in ROIs to/from iPACS * VivoScript: improve loading of remote data * VQ: Improved memory footprint for loading large 2D images * VQ: Square paintbrush for 2D data * VQ: Fixed instability issue in PK modeling tool * CiQuant: Added module for calibration of Autoradiography data * 3D ROI: Fixed save buttons for quantification plots * VQ: Support for Gamma Medica PET data * VQ: Improve message for beta/alpha testers * VQ: Fixed loading of large dynamic img/hdr PET data * Timeseries: Added global min/max option for time series view * NMCT Tool: Fix "L/R split" with "Import 3D ROI" in NM/CT tool * Preprocess: general support for activity data units for injected dose * VQ: Fixed help guide on Mac OS X * VQ: Improved download and timeouts in iPACS communication * VQ: Added support for gated Siemens Focus120 data * Sessions: Added session support for RGB data sets * VQ: Extend bounds on maximum voxel size ratio * VQ: Retire NM/PT Tumor Analysis tool * 3D ROI: Fixed updating of ROI drop-down menus * VQ: Improved font sizing and looks * VQ: Add support for dynamic NanoScan MRI data * VQ: Substantial improvements to help guide * VQ: New hints and workflows available by default Dazzling Dolphin - VQ 1.23patch1: * Data: Fix overflow bug for large MHD/RAW data sets * 3D ROI: Fix crash when uploading ROIs while some data sets not from iPACS * NMCT Tool: "L/R split" functionality for imported ROIs * DICOM: Fix support for dynamic FrameReferenceTime PET images * NMCT Tool: Fix potential new line issues on Mac OS X * NMCT Tool: Fix scaling co-registration transform * Data: Persist units from MHD/RAW data sets when saving DICOM * 3D ROI: Fix potential crash when loading data set larger than reference * 3D ROI: Improved segmentation algorithms by disabling prior smoothing - VQ 1.23patch2: * Modeling: Improve axis label for Logan Reference Analysis * Reorientation and Modeling: Fix stability issue when loading data of various sizes * DICOM: Fix appending data with same FOR after pre-processing * Tile View: Fix scroll wheel navigation after first entry * VivoScript: robust loading of data via the Dicom Browser - VQ 1.23patch3: * VQ: Fix resampling of %ID/g units - VQ 1.23: * Annotation Tool: allows to store annotations on iPACS * Sessions: Can be stored within projects on iPACS * Registration: Added support for deformable registration * 3D ROI: Added VTK Viewer support for Distance/Annotation lines * 3D ROI: Added classic MIP support for Distance/Annotation lines * 3D ROI: Added 2D Erosion/Dilation * Registration: Added sub-region focused registration. * Data: Added support for intercept in mhd/raw loader * Registration: Optimize registration parameters using smarter minimum steps * Data Browser: Make projects filter case-insensitive * 3D ROI: Copy/Paste of ROIs between instances of VQ * 3D ROI: Modal resampling of ROIs that do not fit into data space * 3D ROI: GPU Volume Rendering when supported by graphics card * Registration: Reorientation of volumes using mouse and VTK Viewer * 3D ROI: Added support to store ROIs in binary VTK (.bin.vtk) and STL (.stl) * VQ: Migrated to ITK4 * VQ: Integrated Service Reporter into VQ (Help|Request Help) * Installer: close Debug Viewer and Help manual * Installer: Removed 21 CFR part 11 options (now require manual setup) * Data: Support fusion of data with same FrameOfReferenceUID * Data: Improve Min/Max tool use and warnings * Dosimetry: Fix incorrect use of seconds units * 3D ROI: Improve performance of VTK Viewer * 3D ROI: Remember MIP viewer type for each operator * Registration: Optimize resampling and register all to ref. * 3D ROI: Fix deleting of arbitrary ROI list * Registration: 3D and 2D Non-linear registration * 3D ROI: Fix issue with rendering/transparency of ROIs * Data: Fix scaling transforms of data with activity units * 3D ROI: Added reorientation of ROIs * Filtering Op: Improved progress/canceling * Data: Added configurable option of Frame Of Reference UID * WB Atlas: Added uploading/deleting of segmentations * Filtering Op: Fixed FWHM computation * Data: Added scaling of vector transforms for activity units * Data: Fixed recursive loading of Capture Dicom images * VQScript: Fixed lsDir requiring filter * VQScript: Added script for ROI animation * Sessions: Fixed loading of sessions for 2D data * Data: Speed up loading of multiple image files * VQ: Fixed bug with dynamic selector widgets * 3D ROI: Fixed crash in generate bounding cylinders segmentation * VQ: Fixed crash when closing VivoQuant * PKMod: Added Modeling Operator for dynamic data analysis * PKMod: Added Patlak and Logan PK-models for analysis of 3D ROIs * MRTools: Enhanced MR estimation tools and integrated with Modeling * VQScript: Fixes for peek button for VivoScripting * Data: Fix for MHD/Raw import of 4D orientation information * VQ: Added configurable option to ask about disabling MIP * VQScript: Added modification/reading of unique IDs * Registration: Improved stability and defaults for registration * DICOM: Improved loading of 4D dynamic data sets * Registration: Make interpolator more visible in Reorient Op * 3D ROI: volume computation for planar data * DICOM: Fix for 4D dynamic MR loading * 3D ROI: Added merge ROI option * 3D ROI: Improved memory usage and performance of ROI Smoothing * NMCT: Many pipeline and performance improvements to NM/CT tool * NMCT: Added download option to quickly install atlases * Data: Added big endian support for Save as Raw * Data: Added support for load/save of compressed Raw files (.zraw) * Data: Fixed custom loading of "raw" data when "mhd" file present * VQ: Allow enabling/disabling of MIP in real-time * Data: Added planar interpolator for anisotropic data * VQScript: Added combination of frames to gif and example * Data: Added support for SkyScan image formats (log/bmp, png, jpg, tif) * VQ: Improved data opening menu options * VQScript: Added skull stripping example * VQ: Allow import of compressed license files * fMRI: Many optimizations and improvements, decoupling from MCR * Data: Added unit conversion to %ID and %ID/g * Images: Added time series color bar to monitor progress of movies * 3D ROI: Fix edge case for setting transparency of ROI surface rendering * Data: Added support for NanoScan interleaved acquisitions * Data: Improved support for loading datasets with large number of slices (>1000) * 3D ROI: Improved Erode/Dilate for 2D/planar images * Data: Improved support for Xenogen luminescentFloatCorrected.TIF images * Sessions: Fixed loading sessions with space in name * 3D ROI: Fixed Connected Thresholding (removed intermediate smoothing step) * Data: Added support SkyScan CT data (png, tif, bmp, jpeg) * Data: Fixed support for Xtreme tiff images * iPACS: Fixed stuck communication with iPACS on broken XML interchange * 3D ROI: Added modal smoothing for ROIs * VQ: Improved integration into Siemens Image Research Workstation (IRW) * VQScript: Added tools for DICOM Relabeling Classy Caribou - VQ 1.22: POST-RELEASE CHANGES: patch1: * VQ: Fixed bug in responsive slices after filter op * VQ: Fix crash when entering Reorient op in 2D mode * VQ: Fix update of classic MIP after reorienting reference * VQ: Fix preview of registration when ref is checked * VQ: Add stop button to automatic image registration * VQ: Fix loading crash after doing 2D auto registration * VQ: Optimize moving of images in DataList * VQ: Improve default settings for auto registration * VQ: Fix force planar loading for ZIPACS data * VQ: Fix loading of MHD files with same file name * VQ: Mac: Added iPACS Sync (right click VQ logo in dock) * VQ: iPACS Sync: fixed problem with special chars in pwd * VQ: Fix SUV unit conversion in pre-processing tool patch2: * VQ: Fix memory leak in MPR Viewer * VQ: Fixed ordering if Img/Hdr frames * VQ: Fixed meta-data for MR estimation output * VQ: Added undo/redo support to 3D ROI tool * DICOM: Added support for loading non-DICOM data from iPACS * VQ: 3D ROI: Replaced Load/Save/Submit buttons * VQ: Data Browser: Added projects filter * VQ: Rewrote sessions manager (preview, iPACS store, PubLink, ...) * VQ: Improved 2D and 4D loading of MHD/RAW/MHA * VQ: Improved Transform ROI workflow (RO data always NNB interpolated, replace/unload options in importer, immutable flag respected) * VQ: Increased size limits on MHD/RAW/MHA image loading * VQ: Added workaround for Mediso topogram voxel size bug * VQ: Added support for saving and loading of slice-by-slice transforms * VQ: Added Edit button to VivoScript config * VQ: DicomBrowser: Fixed clearing/hiding project list * VQ: 3D ROI: Added ROI Slice Interpolator (Tonyapolator) * VQ: 3D ROI: Added MPR view * VQ: Added Hints window * VQ: 3D ROI: Improved performance of path rendering (Spline Tool) * VQ: Follow iPACS redirects (e.g. HTTP to HTTPS) * VQ: Fixed mirrored VTK rendering * VQ: Fixed memory leaks in Segmentation Tools * VQ: Improved loading of mhd/mha data with add. meta information * VQ: Fixed crash when saving images with disabled MIP * VQ: Improved load of DICOM data with missing slices or odd instance numbers * VQ: Improved loading of Bruker MR data (Paravision) * Mac: Fixed installer for Mac OS X Mountain Lion * VQ: Added Linux (RHEL/CentOS/Scientific Linux 5, more on request) support * VQ: Added Merge ROI function * VQ: Added start-up hints * VQ: 3D ROI: Added bounding cylinder algorithm * VQ: Preprocessing: Fixed bug in conversion from concentration to SUV * VQ: 3D ROI: Extended rendering options * VQ: TimeSeries: fixed min/max calculations * VQ: Added Data Browser project filter * VQ: QuantiCalc: Added 'Submit to iPACS' * VQScript: Added '#include "library.vqs"' * VQ: DicomBrowser: increased treetable space, show SECURE connection on Mac, fixed remembering settings * VQ: DicomBrowser: Mark non-DICOM data in italics, show FileType * VQScript: Added 'VQ.suspend()' * VQScript: Added Persistent Hash * VQ: Merged Registration Operator into Reorientation Operator * VQ: Added metric plot registration progress dialog * VQ: Added registration previews in slice view * VQ: Merged VTK view controls to MIP controller * VQ: Added toggle between "Classic" and "VTK" MIP views * VQ: Added cropping preview in VTK view * VQ: Added MR tools for T1/T2/ADC estimation * VQ: Added slice-by-slice registration * VQ: Added Modal interpolator * VQ: Improved resampling of images * VQ: Fixed enabling of viewer controls for dynamic data * VQ: Fixed saving of high resolution rendering images * VQ: Added magnification factor for saving high resolution images * VQ: Fixed ROI undo to preserve hidden and immutable states * DICOM: Store correct voxel sizes with Capture images * DICOM: Load Capture images in Capture Viewer when loaded manually * VQ: Fix pre-processing error when no repository is selected * 3D ROI: Increase range of ROI Max Size * 3D ROI: Improved progress bars for segmentation algorithms * VQ: Use global minimum voxel size setting for Inveon Img/Hdr format * VQ: Added dosimetry AUC computation plugin * VQ: Fixed loading of VQ saved affine transforms * VQ: Fixed registration using rigid transforms * VQ: Added support for Paravision processed Bruker data * VQ: Fixed canceling of reorientation operation * VQ: Fixed loading of non-square pixels in dynamic Bruker data * VQ: Added comment description parsing to dynamic Bruker data * VQ: Fix default palette when set to inverted * VQ: 3D ROI tool: fixed bug in spline tool not being filled properly * VQ: Added rudimentary GE Locus Ultra microCT importer * VQ: Enabled movie saving in Time Series operator from Tile View * VQ: Added configurable anchor points for loading of input images * VQ: Added option to register all input images to reference * 3DROI: Fixed painting on last slice * VivoScript: Added many more examples, e.g. RepairSlices, Ruler, Dark-Tumor, SplineMM, ... * VQ: Fixed import of multiple jpeg/tiff/png files at once Brave Beaver - VQ 1.21: 2012-06-06 feature release POST-RELEASE CHANGES: patch6: * VQ: Fixed errors in deferred loading not being reset * VQ: Follow iPACS redirects (e.g. HTTP to HTTPS) patch5: * iPACS: Enable saving/loading of relative ROI filenames * VQ: Submit QuantiCalc results to iPACS * VQ: Added DigiMouse Atlas * Mac: Fixed installer for Mountain Lion patch4: patch3: * VQ: Fixed potential crash when loading 4 datasets * VQ: Fixed crash when loading new data while in 3D ROI tool * VQ: Added support for relative ROI path names patch2: * VQ: Win32: Fixed access to secure IPACSS/HTTPS systems * VQ: Fixed instModal hack for dynamic PET data * VQ: Improved reporting of errors in Save Image * VQ: Avoid crash in 3D ROI Tool with disabled MIP * VQ: Fixed export of CSV histogram with non-0 minimum * VQ: Added workaround for Mediso topogram voxel size bug patch1: * VQ: Fixed bug in filtering operator with disabled modalities * VQ: Fixed import of multiple datasets in one step * VQ: Improved WebDisk error detection * VQ: Fixed CSV header for Q++/3D in planar mode * VQ: Fixed MIP image cache when min/max changes * VQ: Fixed orientation of 3D ROI MIP vs old MIP * VQ: Fixed crash when uploading empty ROI to iPACS * VQ: Quanti++: Added slice number and vertical labels * VQ: Fixed crash in cropping operator * VQ: Fixed crash in grow reference * DICOM: Fixed SpacingBetweenSlices and SliceThickness * VQ: 3D ROI: Allow export of individual ROIs to Volume * VQ: Added 14 day grace period to unstable versions to expire * VQ: Improved loading small ref with large input images (smart cropping) * VQ: Added support for unit 'nCi/cc' * VQ: Made min/max tool dockable window * VQ: Fixed crash on Win32 when closing * VQ: Added sessions * DicomProxy: Added support for https * VQ: Added 'Embed' function to Cropping tool * VQ: Extended Erode/Dilate tool (move levels, map-to-roi) * DICOM: Improved performance of DICOM loader (about 40-150% faster) * iPACSSync: Added upload status and improved log output to sync logfile screen. * VQ: Added "Apply and Next" button to Spline Widget auto-thresholding option. * iPACSSync: Added email messaging for failed or successful sync jobs. * iPACSSync: Added the ability to manually run sync jobs from main window. * iPACSSync: Added filter (include/exclude) option to sync job configuration. * iPACSSync: Added functionality to select iPACS WebDisk folders from sync job config screen. * VQ: Reworked distance op into an annotation tool (modify, live update, session support, arrows, and many more new features). * VQ: Re-iconed Data Browser, DM, and a few other places * VQ: Improved reporting of success for Anonymizer/Relabeler * VQ: Added VQScript to use ECMA script to control VQ * VQ: Added Tools|Adv Seg|Split DICOM 2 ROI * VQ: TimeSeriesOp: fixed lock/play inconsistencies * VQ: Fixed sum-preserving interpolation for unit COUNTS * DicomProxy: Moved configuration from config file to configuration screen * DicomProxy: Added C-MOVE DICOM association support * VQ: Added '3D ROI View' operator to 'Tile View' * VQ: Improved performance of Cropping (twice as fast), now also applies crop range to 3D ROI * VQ: Added support for nrrd import * VQ: Added support for XTK export (via Export2XTK script) * VQ: Improved performance of cropping * VQ: Record application of default shift in DerivationImageSeq * VQ: Detect previous application of default shift (only applied once) * VQ: Added VQScript toolbar * VQ: Fixed overflow in large operator windows * VQ: Fixed view updates in Reorientation Operator * VQ: ITK-powered multi-threaded affine reorientation * VQ: Added progress bars and canceling to 3D ROI Operator * VQ: Optimized image loading and memory management * DICOM: Added support for all possible image orientations from Dicom header * VQ: Added support for loading Nifti-1 orientations from header * DICOM: Added support for dynamic 4D MR data * DICOM: Enforce orthogonality of direction cosines to workaround faulty IPP's * VQ: Added slice-by-slice manual reorientation * VQ: Fixed overflowing operator windows * VQ: Fixed a couple of DICOM related memory leaks * VQ: Fixed connection between min/max tool and tile/multi view * VQ: Added 'Append Data' to Filtering operator * VQ: 3D ROI Tool: Fixed camera reset * VQ: Apply ROI to all missed one slice * VQ: Fixed estimation of area in planar data * DICOM: Avoid default shift being applied multiple times * Reporter: Updated scenarios, automatically include VQ/IVS logfile * VQ: Added further workflows (Loading, PreProcessing, NM/CT & Atlas tools) * VQ: 3D ROI Tool: Allow reclassification by size * VQ: 3D ROI Tool: Added Lackas' hole filler * VQ: Added VQ Script examples (e.g. Otsu thresholding, Humane Ratskinner, ...) * VQ: Reorientation: Added session support * VQ: Improved VQ registration page * VQ: Pre-Processing tool now publicly available * DICOM: Added support for JPEG and RLE compressed data * DICOM: Added support for short data type * VQ: 3D ROI: Added 'Export ROIs' for selected ROIs Adorable Armadillo - VQ 1.20 2011-11-11 bugfix release POST-RELEASE CHANGES: patch4: * VQ: Added support for relative ROI path names patch3: * VQ: Q++: fixed calculation of stddev * VQ: Q++: fixed loading of ROI (range) patch2: * Improved build system, works on more Windows systems patch1: * 3DROI: Fixed immutable flag in erode/dilate * 3DROI: Added 'Map to' ROI to erode/dilate to add/remove layers classified as different ROI * 3DROI: Fixed spline widget tool box * VQ: Added minVoxSize configuration option to rescale ref data on loading * VQ: Reorientation: Fixed small offset in non-quick transform * VQ: Allow fusion of 1-slice 2D data with n-slice planar data (e.g. MR/Optical) * VQ: Allow user to set voxelsize for image formats (e.g. TIFF, PNG, JPEG) * DICOM: Improved support for sagittal/coronal slice DICOM data * DICOM: Added support for non-square pixels * VQ: Improved detection of useful hardware keys * VQ: Improved support of HTTPS encrypted communication * VQ: Added recursive mode for local DICOM folders (append '*' to end of dirname) * VQ: Added Advanced Analysis: Preprocessing tool * VQ: Fixed crash in DistOp for co-reg without points * VQ: Improved Bruker import (don't load rep unless you store) * VQ: Added comprehensive pre-processing tool (Adv. Analysis) * VQ: Fixed CT bed removal after ref volume growing * VQ: Reorientation improved for 1-slice data * VQ: Improved Min/max tool to support increased ranges * VQ: Improved range of Min/Max Tool * VQ: Added Percentile tool to Min/Max Tool * VQ: Improved performance of 3D ROI tool (navigation, painting) * Import: Improved support for Bruker data * VQ: Added crop range to 3D ROI Tool (use Cropping tool) * VQ: Added Tools|Workflows with user scriptable workflows * iPACS: Improved HTTPS certification warning handling * CT: Added user configurable window presets * VQ: Fixed proxy settings for service reporter * CT: Added detector rotation angle to CT calib and ECB reco * CT: Added 'Override calibration' to advanced settings * DICOM: Added support for Mediso 3D PET reco orientation * iPACS: Added Annotations to Data Manager * iPACS: Fixed OpenIn for IPACSS/HTTPS * iPACS: Added OpenIn for non-DICOM files (requires iPACS 1.05beta08+) * VQ: DicomDump: allow access to all DICOM headers (e.g. input3) * DICOM: Fixed storage of non-projection large-value planar data * 3D ROI: Added support for deleting/clearing/hiding selected ROIs by right clicking * 3D ROI: Improved stability of VTK MIP viewer * 3D ROI: Increased precision of threshold input fields * VQ: Added support for Mac OS X 10.7 (Lion) * VQ: DicomBrowser remembers column widths - VQ 1.19 / IVS 1.44 * IVS: Added "3D ROI tool" with surface and volume rendering * IVS: Added segmentation algorithms: global thresh., connected thresh., neighborhood thresh., histogram- based auto-thresh., confidence connected auto-thresh. * IVS: Added support for *.mha files (mhd/raw in same file) * IVS: Improved IVS startup time if no HiSPECT is installed * IVS: Improved slice rendering times (via caching) * CTReco: Increased max number of threads to 16 * IVS: Update Manager: Fixed bug with incomplete downloads * IVS: Optimized reading large dynamic datasets * IVS: Optimized Nifti meta-information * IVS: Added Time Series (T slider) operator for Tile View * IVS: Migrated to Qt 4.7.2 on all platforms * IVS: Rewrote Smoothing operator, now featuring edge-preseving filters such as Curvature Flow and Gradient/Curvature Anisotropic Diffusion * IVS: Added 'Apply ROI to all slices' to analyse dynamic planar * IVS: Improved support for 2D raw/mhd/mha data * IVS: Added support for 4D raw/mhd/mha data * IVS: Added 'Select FOV' to Quantification Options * IVS: Optimized QuantificationOp: Added icons, made table a float * IVS: Added support for loading regular images (tif, png, jpeg, bmp) * IVS: Added support for loading vtk files * IVS: Added basic support for Scanco AIM CT files * IVS: (Optionally) add seconds to DICOM browser times * IVS: img/hdr: fixed frame-specific scalar_factor * CTReco: added 'Force NSP' mode to allow NanoSPECT/CT Plus reconstruction * CTReco: enabled expert mode axial offset * HiSPECT: Moved HiSPECT tools into SPECT menu * iPACS: Added support for 'delete' (required 'd'-flag for project) * IVS: Renamed 'Smoothing' operator to 'Filtering' * IVS: FilteringOp: Added Laplacian Sharpening, Gradient Magnitude, Sobel Edge Detection, Zero Crossing Edge Detection, Median * IVS: Cropping: added Auto-cropping * IVS: Fixed logfile path on Windows * IVS: Removed 'Tools' from tools in 'Tools' menu Renamed 'Segmentation Tools' to 'Advanced Analysis' * IVS: Q++: Changed display of scan range from vox to mm * DICOM: Added support for XZY oriented data (e.g. ASPECT MRI) * IVS: Added unit to Histogram * DICOM: Added DICOM Tools with a 'DICOM Study Relabeler' and a 'DICOM Anonymizer' (both can be configured by *.cfg files)