% Master config ----------------------------------------------------------

% Reconstruction window sizes in mm (width, height)
ROIsizes = [25 20; 25 40; 25 60]

% Run reconstruction after preprocessing (if set to 0 reconstruction will not run, only preprocessed data will be generated)
runRecon = 1

% Number of iterations (maximum number of iterations)
iteration = 500

% Epsilon (stop criteria epsilon for iterative reconstruction process minimal percentage change of error function within two iteration steps)
epsilon = 0.000100

% Spectrum calibration file to use
% If this parameter is not set, 2.cal will be used (IVIS 200 - firefly)
spectrumCalibrationTable = '2.cal'

% Time calibration mode
timeCalibrationMode = 1;  % 1 - mean of circle ROI around open filter image peak, 2 - mean of entire open filter image

% Debug mode (if set to 1, job folder will not be deleted)
debug = 0

% Print preprocessing output to stdout if verbose = 1
verbose = 0




%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%   Possible keys and their default values    %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% default, bowel, muscle, adipose, bone, heart wall, kidney, liver & spleen, lung, stomach wall, skin, whole blood, phantom(for tissue model)
% optimization_map = 'default'

% Object height in mm, 13mm for the prototype bed
% objheight = 13

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%