ROI Neighborhood Segmentation

var scriptPath = VQ.getScriptPath().replace(/[/\\][^/\\]+$/, "");
var outputPath = ""; 
 
//---------------------------------------------------------
// Start - Only for internal testing (users can disregard or remove)
//---------------------------------------------------------
var isTestModule = scriptPath.indexOf("extern/t/TestModules") !== -1;
VQ.setTestMode(isTestModule);
 
function getArtifactOutputFolder() {
    const cachePath = VQ.getCache();
    return cachePath.substring(0, cachePath.lastIndexOf("/") + 1) + "artifacts";
}
 
if(VQ.isTestMode()){
    outputPath = getArtifactOutputFolder();
}
//---------------------------------------------------------
// End - Only for internal testing (users can disregard or remove)
//---------------------------------------------------------
 
VQ.setConfig('Data/resampleROI',1,true);
VQ.setConfig('DICOM/useFOR', 1, true);
VQ.setConfig('Data/orientation', "Neurologist (LR)", true);
 
VQ.setConfig('Data/dynamicSupportEnabled', true, true);
VQ.setConfig('Data/disableMIPViewer', true, true);
 
//----------------------------------------------
 
var dm = VQ.dataManager();
var mw = VQ.mainWin();
 
var CTTestData = scriptPath + "/data/CTSynthetic.dcm";
dm.openDat(0, [CTTestData]);
 
VQ.debug("LOADED:"+dm.getSOPUID(0));
test_switch_labels(false);
 
if(outputPath == ""){
    outputPath = scriptPath;
}
 
neighborhoodSegmentation();
test_save_slices(getTestName());
 
if(VQ.isTestMode()){
    VQ.quit();
}
 
function neighborhoodSegmentation() {
 
    VQ.mainWin().setViewMode("Slice View", "3D ROI Tool");
    VQ.mainWin().normalSize();
 
    VQ.getWidget("tabWidget").setCurrentIndex(3);
    var op = VQ.currentOp();
    VQ.getWidget('cbCropRange').setChecked(false);
    
    op.addROI("ROI 1", "red");
    
    // Applying Neighborhood Thresholding
    VQ.getWidget("MagicSegmentationSelector").setCurrentIndex(2);
 
    op.setInputROI(0);
    op.setCurrentROI(1);
 
    VQ.getWidget("MagicThresholdMin").setText("1");
    VQ.getWidget("MagicThresholdMax").setText("100");
    
    VQ.getWidget("MagicPreview").setChecked(true);
    test_save_slices(getTestName() + "-preview");
    VQ.getWidget("MagicPreview").setChecked(false);
 
    VQ.getWidget("MagicApply").click();
}
 
function getTestName() {
    var scriptFilename = VQ.getScriptPath();
    return scriptFilename.substring(scriptFilename.lastIndexOf("/")+1, scriptFilename.lastIndexOf("."));
}
 
function test_save_slices(base) {
    test_save_image("test-" + base + "-sag.png", 1);
    test_save_image("test-" + base + "-cor.png", 2);
    test_save_image("test-" + base + "-tra.png", 3);
}
 
function test_save_image(filename, direction) {
    VQ.mainWin().saveImage(outputPath + "/" + filename, direction);
}
 
function test_switch_labels(b) {
    VQ.mainWin().switchCornerInfo(b);
    VQ.mainWin().switchCrosshair(b);
    VQ.mainWin().switchPosLabels(b);
    VQ.mainWin().switchShowActive(b);
}