The following pages are tagged with
| Title | Excerpt |
|---|---|
| Multi-Atlas Segmentation Tool | Overview The Multi-Atlas Segmentation Tool generates ROIs by registering a series of images in a Reference Library to the image that has been loaded in the Data Manager. The Reference Images must each have a corresponding ROI. The tool registers the images in the Reference Library to the... |
| Create a custom Brain Atlas | How to create a Custom Brain Atlas A custom brain atlas can allow the user to perform other registrations based on your own ROIs, and on images of other animal species. This can be done with the provided wizard in VivoQuant. The following files comprise an atlas: ... |
| 3D ROI | Overview ROI stands for Region of Interest and is used to describe a particular area or volume within an image for which the user wishes to characterize some quantity or quality. The 3D ROI operator provides advanced tools for drawing, visualizing, saving, and quantifying both 2 and 3 dimensional... |
| 3D ROI Dynamic Layers | Dynamic Layers Dynamic layers are ROI layers that are linked to specific timepoints in a multi-timepoint dataset. Unlike static layers, which apply globally across all timepoints, each dynamic layer is associated with a particular timepoint index and will automatically be selected as you navigate through the data. To manage... |
| 3D ROI Expert Settings | Expert Settings The Expert tab, presents the advanced settings of the 3D ROI Operator. For the typical user, these settings will not need to be changed. Expert Settings Data Group By default, VQ ROIs are written in a compressed... |
| 3D ROI Loading / Saving | ROI Loading Saving and Quantification Tools The first tab in the 3D ROI Operator window features tools for basic input/output operations, quantification, and viewing functionality. To freely navigate through the slices with the cursor, this panel must be active. <img class="docimage" src="assets/images/roi/operators_3droitool_firsttab.jpg" alt="Basic ROI Functions"... |
| 3D ROI Quantification | Show Image Histogram To view a histogram of the image or any subset of the image determined by an ROI, click the Show Histogram button. Choose the image used to generate the histogram by selecting it from the Data Set drop-down menu. The... |
| 3D ROI Segmentation | Drawing Tools The 2D drawing tools match the options available within the Projection++ Tool. 2D Drawing Tools Choose the desired tool from the drop-down menu to begin drawing. Use the button to delete... |
| Projection | The Projection operator provides a means to quantify density and activity parameters in CT and NM, MR, PET, or SPECT images. The operator provides several options for generating quantification data. There are multiple methods for setting the region of interest, flexibility in selection of the quantification view direction,... |